Info • Nannochloris desiccata UTEX 2526

Status

The Nannochloris desiccata UTEX 2526 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 21, 2022. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 734 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 21.55
Sequencing read coverage depth 31.0x
# of contigs 18
# of scaffolds 18
# of scaffolds >= 2Kbp 18
Scaffold N50 5
Scaffold L50 (Mbp) 1.64
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.79, 2.53, 2.15


Gene Models FilteredModels1
length (bp) of: average median
gene 1795 1416
transcript 1591 1251
exon 681 302
intron 155 124
description:
protein length (aa) 530 417
exons per gene 2.33 2
# of gene models 8818


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.