Info • Nannochloropsis gaditana B-31


The genome sequence and gene models of Nannochloropsis gaditana B-31 have not been determined by the JGI, but were downloaded from NCBI, on November 13, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Nannochloropsis gaditana release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.59
Sequencing read coverage depth 20x
# of contigs 3876
# of scaffolds 684
# of scaffolds >= 2Kbp 131
Scaffold N50 11
Scaffold L50 (Mbp) 1.07
# of gaps 3192
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 1.55, 1.44, 1.38

Gene Models ExternalModels
length (bp) of: average median
gene 1956 1693
transcript 1645 1391
exon 607 254
intron 184 160
protein length (aa) 410 322
exons per gene 2.71 2
# of gene models 10929

Genome Reference(s)


This project was not sequenced at the JGI.