Info • Nannochloropsis salina CCMP1776

Status

The Nannochloropsis salina CCMP1776 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Nannochloropsis salina CCMP1776 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.76
Sequencing read coverage depth
# of contigs 1212
# of scaffolds 196
# of scaffolds >= 2Kbp 188
Scaffold N50 13
Scaffold L50 (Mbp) 0.83
# of gaps 1016
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 1.56, 1.46, 1.38


Gene Models ExternalModels
length (bp) of: average median
gene 2035 1604
transcript 1571 1233
exon 491 171
intron 213 179
description:
protein length (aa) 523 411
exons per gene 3.20 2
# of gene models 8927


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ohan JA, Hovde BT, Zhang XL, Davenport KW, Chertkov O, Han C, Twary SN, Starkenburg SR
Nuclear Genome Assembly of the Microalga Nannochloropsis salina CCMP1776.
Microbiol Resour Announc. 2019 Oct 31;8(44):. doi: 10.1128/MRA.00750-19

Funding

This project was not sequenced at the JGI.