Info • Neurospora crassa FGSC2225 Mauriceville-1cA (aka "MV") v1.0

Status

[April 2023] The Neurospora crassa FGSC2225 Mauriceville-1cA (aka "MV") v1.0 genome was sequenced with PacBio, assembled with MECAT, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 41.18
Sequencing read coverage depth 268x
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 6.06
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.87, 6.55, 6.06


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 17940241 17763056 99.0%
Other IsoSeq_hq_reads 52989 51983 98.1%
Other RNAseq_contigs 31349 30602 97.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2037 1800
transcript 1850 1619
exon 698 423
intron 115 76
description:
protein length (aa) 511 423
exons per gene 2.65 2
# of gene models 9807


Collaborators

  • Michael Freitag, Department of Biochemistry & Biophysics, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.