Info • Nemania abortiva FL1152 v1.0

Status

[March 2019] The Nemania abortiva FL1152 genome was sequenced with Illumina, assembled with SPAdes v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Nemania abortiva FL1152 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.61
Sequencing read coverage depth 116.235415202x
# of contigs 898
# of scaffolds 888
# of scaffolds >= 2Kbp 635
Scaffold N50 80
Scaffold L50 (Mbp) 0.20
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.08, 0.86, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41552 38775 93.3%
Ests est.fasta 87729460 86609480 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2034 1799
transcript 1838 1611
exon 581 363
intron 92 67
description:
protein length (aa) 492 412
exons per gene 3.16 3
# of gene models 14125


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.