Info • Nemania sp. NC0429 v1.0

Status

[June 2019] The Nemania sp. NC0429 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Nemania sp. NC0429 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.85
Sequencing read coverage depth 127.829726791x
# of contigs 394
# of scaffolds 379
# of scaffolds >= 2Kbp 356
Scaffold N50 38
Scaffold L50 (Mbp) 0.33
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.41, 1.11, 1.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53002 50664 95.6%
Ests est.fasta 220489104 219139548 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2083 1851
transcript 1871 1650
exon 607 378
intron 104 73
description:
protein length (aa) 488 405
exons per gene 3.08 3
# of gene models 11703


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.