Status
[August 2022] The Neocallimastix constans G3 v1.0 genome was sequenced with PacBio, assembled with Flye and annotated with the JGI annotation pipeline.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 187.12 |
| Sequencing read coverage depth | 61.03x |
| # of contigs | 558 |
| # of scaffolds | 558 |
| # of scaffolds >= 2Kbp | 556 |
| Scaffold N50 | 83 |
| Scaffold L50 (Mbp) | 0.70 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.34, 2.31, 2.11 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 44160 | 38403 | 87.0% |
| Ests | est.fasta | 453262342 | 423199772 | 93.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2445 | 1871 |
| transcript | 1676 | 1247 |
| exon | 365 | 150 |
| intron | 217 | 161 |
| description: | ||
| protein length (aa) | 522 | 372 |
| exons per gene | 4.59 | 3 |
| # of gene models | 23663 |
Collaborators
- Michelle O'Malley, UC Santa Barbara, California
Links
- JGI PhyloGroup Portals: Fungi Chytridiomycota Neocallimastigomycetes
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
