Info • Ilyonectria sp. MPI-CAGE-AT-0134 v1.0

Status

[August 2018] The Neonectria radicicola MPI-CAGE-AT-0134 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Neonectria radicicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 71.72
Sequencing read coverage depth 140.55x
# of contigs 82
# of scaffolds 82
# of scaffolds >= 2Kbp 81
Scaffold N50 9
Scaffold L50 (Mbp) 3.23
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.39, 5.98, 3.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55610 52036 93.6%
Ests est.fasta 251027069 249371909 99.3%


Gene Models FilteredModels2
length (bp) of: average median
gene 1726 1503
transcript 1568 1356
exon 536 336
intron 84 60
description:
protein length (aa) 453 378
exons per gene 2.93 2
# of gene models 22025


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.