Info • Neocallimastix californiae G1 v1.0

Status

[November 2015] The Neocallimastix californiae G1 genome was sequenced using the PacBio platform and assembled together with Falcon+FinisherSC.

Summary statistics for the Neocallimastix californiae G1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 193.03
Sequencing read coverage depth 20x
# of contigs 1819
# of scaffolds 1819
# of scaffolds >= 2Kbp 1801
Scaffold N50 134
Scaffold L50 (Mbp) 0.44
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.84, 1.45, 1.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 29649 25262 85.2%


Gene Models FilteredModels5
length (bp) of: average median
gene 2295 1761
transcript 1587 1200
exon 373 167
intron 220 169
description:
protein length (aa) 482 351
exons per gene 4.25 3
# of gene models 20219


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Haitjema CH, Gilmore SP, Henske JK, Solomon KV, de Groot R, Kuo A, Mondo SJ, Salamov AA, LaButti K, Zhao Z, Chiniquy J, Barry K, Brewer HM, Purvine SO, Wright AT, Hainaut M, Boxma B, van Alen T, Hackstein JHP, Henrissat B, Baker SE, Grigoriev IV, O'Malley MA
A parts list for fungal cellulosomes revealed by comparative genomics.
Nat Microbiol. 2017 May 30;2():17087. doi: 10.1038/nmicrobiol.2017.87

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.