Info • Nemania serpens AZ0576 v1.0

Status

[June 2019] The Nemania serpens AZ0576 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Nemania serpens AZ0576 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.48
Sequencing read coverage depth 121.434206729x
# of contigs 574
# of scaffolds 565
# of scaffolds >= 2Kbp 487
Scaffold N50 44
Scaffold L50 (Mbp) 0.36
# of gaps 9
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.31, 1.09, 1.03


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44245 41433 93.6%
Ests est.fasta 116395055 114108885 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 2074 1836
transcript 1867 1633
exon 600 368
intron 100 71
description:
protein length (aa) 495 413
exons per gene 3.11 3
# of gene models 11778


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.