Info • Nemania serpens CBS 679.86 v1.0

Status

[June 2019] The Nemania serpens CBS 679.86 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Nemania serpens CBS 679.86 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.89
Sequencing read coverage depth 87.3008809654631x
# of contigs 413
# of scaffolds 395
# of scaffolds >= 2Kbp 372
Scaffold N50 43
Scaffold L50 (Mbp) 0.34
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.88, 1.37, 1.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 59420 58552 98.5%
Ests est.fasta 202984359 202101766 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2055 1818
transcript 1851 1629
exon 597 374
intron 99 70
description:
protein length (aa) 483 401
exons per gene 3.10 3
# of gene models 12184


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.