Status
The genome sequence and gene prediction of Oidium neolycopersici UMSG2 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on April 2, 2021. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 41.98 |
| Sequencing read coverage depth | 73.0x |
| # of contigs | 13363 |
| # of scaffolds | 10900 |
| # of scaffolds >= 2Kbp | 5554 |
| Scaffold N50 | 1710 |
| Scaffold L50 (Mbp) | 0.01 |
| # of gaps | 2463 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 0.05, 0.04, 0.04 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2201 | 1755 |
| transcript | 2024 | 1605 |
| exon | 652 | 372 |
| intron | 86 | 58 |
| description: | ||
| protein length (aa) | 452 | 362 |
| exons per gene | 3.10 | 3 |
| # of gene models | 6851 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wu Y, Ma X, Pan Z, Kale SD, Song Y, King H, Zhang Q, Presley C, Deng X, Wei CI, Xiao S
Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew.
BMC Genomics. 2018 Sep 25;19(1):705. doi: 10.1186/s12864-018-5069-z
Wu Y, Ma X, Pan Z, Kale SD, Song Y, King H, Zhang Q, Presley C, Deng X, Wei CI, Xiao S
Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew.
BMC Genomics. 2018 Sep 25;19(1):705. doi: 10.1186/s12864-018-5069-z
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Leotiomycetes
Funding
This project was not sequenced at the JGI.
