Status
Assembly v1 (April 2015) is a standard draft assembly, using Illumina gDNAs assembled with AllPathsLG.
Summary statistics for the Onnia scaura P-53A v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 37.10 |
| Sequencing read coverage depth | 88.8x |
| # of contigs | 2066 |
| # of scaffolds | 834 |
| # of scaffolds >= 2Kbp | 683 |
| Scaffold N50 | 95 |
| Scaffold L50 (Mbp) | 0.12 |
| # of gaps | 1232 |
| % of scaffold length in gaps | 4.7% |
| Three largest Scaffolds (Mbp) | 0.61, 0.52, 0.45 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 42161 | 40219 | 95.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1646 | 1357 |
| transcript | 1341 | 1084 |
| exon | 252 | 152 |
| intron | 73 | 60 |
| description: | ||
| protein length (aa) | 382 | 297 |
| exons per gene | 5.33 | 4 |
| # of gene models | 12895 |
Collaborators
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
