Status
The genome of Ophiostoma piliferum was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Ophiostoma piliferum genome
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 27.26 |
Sequencing read coverage depth | 25.90x |
# of contigs | 7644 |
# of scaffolds | 3462 |
# of scaffolds >= 2Kbp | 1697 |
Scaffold N50 | 244 |
Scaffold L50 (Mbp) | 0.03 |
# of gaps | 4182 |
% of scaffold length in gaps | 2.6% |
Three largest Scaffolds (Mbp) | 0.24, 0.18, 0.18 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1527 | 1200 |
transcript | 1384 | 1074 |
exon | 617 | 347 |
intron | 117 | 70 |
description: | ||
protein length (aa) | 461 | 358 |
exons per gene | 2.24 | 2 |
# of gene models | 8564 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.