Status
The genome sequence and gene models of Ophiostoma piceae CECT20416 v2.0 were not determined by the Joint Genome Institute (JGI), but were provided by Jorge Barriuso in July 2021 from data produced by Novogene Co, Ltd. The genome was sequenced with Illumina, assembled by VelvetOptimiser (version 2.5.5), and annotated by Augustus (version 3.4.0).
In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the JGI and is therefore not automatically updated.
Genome Assembly | |
Genome Assembly size (Mbp) | 32.08 |
Sequencing read coverage depth | |
# of contigs | 231 |
# of scaffolds | 88 |
# of scaffolds >= 2Kbp | 25 |
Scaffold N50 | 3 |
Scaffold L50 (Mbp) | 4.45 |
# of gaps | 143 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 7.11, 6.39, 4.45 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1827 | 1533 |
transcript | 1691 | 1425 |
exon | 799 | 432 |
intron | 124 | 61 |
description: | ||
protein length (aa) | 564 | 475 |
exons per gene | 2.11 | 2 |
# of gene models | 8857 |
Collaborators
- Jorge Barriuso, Biological Research Center, The Spanish National Research Council (CSIC)
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Santos-Pascual R, Campoy I, Sanz Mata D, MartÃnez MJ, Prieto A, Barriuso J
Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae.
Microbiol Spectr. 2023 Oct 5;():e0029023. doi: 10.1128/spectrum.00290-23
Santos-Pascual R, Campoy I, Sanz Mata D, MartÃnez MJ, Prieto A, Barriuso J
Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae.
Microbiol Spectr. 2023 Oct 5;():e0029023. doi: 10.1128/spectrum.00290-23
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Sordariomycetidae Ophiostomatales
Funding
This project was not sequenced at the JGI.