Info • Ostreococcus tauri RCC1115 v1.0

Status

The Ostreococcus tauri genome, release v2.0, was sequenced at Genopole Languedoc-Roussillon and underwent assembly and the initial round of annotation at Ghent University, Belgium.

The updated genome, release v3.0, completed the previous genome sequence using high coverage Illumina reads sequences from JGI (CSP-129). It is 12.9 Mb and contains 7699 predicted genes.

Summary statistics for the Ostreococcus tauri RCC1115 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.90
Sequencing read coverage depth 0
# of contigs 74
# of scaffolds 74
# of scaffolds >= 2Kbp 74
Scaffold N50 9
Scaffold L50 (Mbp) 0.63
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.21, 1.13, 1.05


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 38489844 35396035 92.0%
Other JGI_RNA_contigs 13189 10909 82.7%


Gene Models FilteredModels2
length (bp) of: average median
gene 1456 1160
transcript 1382 1098
exon 902 653
intron 142 85
description:
protein length (aa) 437 338
exons per gene 1.53 1
# of gene models 8218


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C, Desdevises Y, Sanchez-Ferandin S, Moreau H, Rivals E, Grigoriev IV, Grimsley N, Eyre-Walker A, Piganeau G
Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv. 2017 Jul;3(7):e1700239. doi: 10.1126/sciadv.1700239

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.