Status
The Ostreococcus tauri genome, release v2.0, was sequenced at Genopole Languedoc-Roussillon and underwent assembly and the initial round of annotation at Ghent University, Belgium.
The updated genome, release v3.0, completed the previous genome sequence using high coverage Illumina reads sequences from JGI (CSP-129). It is 12.9 Mb and contains 7699 predicted genes.
Summary statistics for the Ostreococcus tauri RCC1115 v1.0
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 14.90 |
Sequencing read coverage depth | 0 |
# of contigs | 74 |
# of scaffolds | 74 |
# of scaffolds >= 2Kbp | 74 |
Scaffold N50 | 9 |
Scaffold L50 (Mbp) | 0.63 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 1.21, 1.13, 1.05 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
Ests | est.fasta | 38489844 | 35396035 | 92.0% |
Other | JGI_RNA_contigs | 13189 | 10909 | 82.7% |
Gene Models | FilteredModels2 | |
length (bp) of: | average | median |
gene | 1456 | 1160 |
transcript | 1382 | 1098 |
exon | 902 | 653 |
intron | 142 | 85 |
description: | ||
protein length (aa) | 437 | 338 |
exons per gene | 1.53 | 1 |
# of gene models | 8218 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C, Desdevises Y, Sanchez-Ferandin S, Moreau H, Rivals E, Grigoriev IV, Grimsley N, Eyre-Walker A, Piganeau G
Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv. 2017 Jul;3(7):e1700239. doi: 10.1126/sciadv.1700239
Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C, Desdevises Y, Sanchez-Ferandin S, Moreau H, Rivals E, Grigoriev IV, Grimsley N, Eyre-Walker A, Piganeau G
Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv. 2017 Jul;3(7):e1700239. doi: 10.1126/sciadv.1700239
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.