Info • Paecilomyces variotii CBS 101075 v1.0

Status

[November 2017] The Paecilomyces variotii CBS 101075 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Paecilomyces variotii CBS 101075 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.11
Sequencing read coverage depth 127.61x
# of contigs 86
# of scaffolds 86
# of scaffolds >= 2Kbp 84
Scaffold N50 5
Scaffold L50 (Mbp) 1.73
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.97, 4.56, 2.25


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51610 38576 74.7%
Ests est.fasta 182666438 181496530 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1961 1722
transcript 1772 1554
exon 542 327
intron 85 65
description:
protein length (aa) 492 410
exons per gene 3.27 3
# of gene models 9270


Collaborators

Dr. Alexander Idnurm, University of Melbourne, Australia

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Urquhart AS, Mondo SJ, Mäkelä MR, Hane JK, Wiebenga A, He G, Mihaltcheva S, Pangilinan J, Lipzen A, Barry K, de Vries RP, Grigoriev IV, Idnurm A
Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales).
Front Microbiol. 2018;9():3058. doi: 10.3389/fmicb.2018.03058

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.