Info • Papiliotrema laurentii 5307AH v1.0

Status

[September 2018] The Papiliotrema laurentii 5307AH genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Papiliotrema laurentii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.51
Sequencing read coverage depth 364.38x
# of contigs 24
# of scaffolds 24
# of scaffolds >= 2Kbp 24
Scaffold N50 5
Scaffold L50 (Mbp) 1.59
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.20, 2.29, 1.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31219 29465 94.4%
Ests est.fasta 232181500 230896168 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2057 1796
transcript 1751 1506
exon 277 171
intron 59 49
description:
protein length (aa) 507 422
exons per gene 6.33 5
# of gene models 7537


Collaborators

Chia Hung, UES, OH, USA.

Joseph Spatafora, Oregon State University, OR, USA.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Roman VA, Haridas S, Hung CS, Pangilinan J, Lipzen A, Na H, Yan M, Ng V, Grigoriev IV, Biffinger J, Barlow D, Kelley-Loughnane N, Crookes-Goodson WJ, Varaljay VA, Stamps BW
Draft genome sequence of the Tremellomycetes yeast Papiliotrema laurentii 5307AH, isolated from aircraft.
Microbiol Resour Announc. 2024 Jul 5;():e0014124. doi: 10.1128/mra.00141-24

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.