Info • Paracoccidioides brasiliensis Pb03

Status

This genome was sequenced by the Broad Institute. Please check their data use policies.

Summary statistics for the Paracoccidioides brasiliensis Pb03 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.06
Sequencing read coverage depth 8.9x
# of contigs 552
# of scaffolds 65
# of scaffolds >= 2Kbp 65
Scaffold N50 6
Scaffold L50 (Mbp) 1.88
# of gaps 487
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 3.65, 3.00, 2.98


Gene Models BroadModels
length (bp) of: average median
gene 1833 1578
transcript 1486 1242
exon 426 207
intron 142 89
description:
protein length (aa) 495 414
exons per gene 3.49 3
# of gene models 7876


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, Longo LV, Ma LJ, Malavazi I, Matsuo AL, Morais FV, Pereira M, Rodríguez-Brito S, Sakthikumar S, Salem-Izacc SM, Sykes SM, Teixeira MM, Vallejo MC, Walter ME, Yandava C, Young S, Zeng Q, Zucker J, Felipe MS, Goldman GH, Haas BJ, McEwen JG, Nino-Vega G, Puccia R, San-Blas G, Soares CM, Birren BW, Cuomo CA
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.
PLoS Genet. 2011 Oct;7(10):e1002345. doi: 10.1371/journal.pgen.1002345

Funding

This project was not sequenced at the JGI.