Info • Paracoccidioides brasiliensis Pb18

Status

The genome and gene models of Paracoccidioides brasiliensis Pb18 were downloaded from NCBI on Oct 21, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

Summary statistics for the Paracoccidioides brasiliensis Pb18 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.95
Sequencing read coverage depth 9.8x
# of contigs 403
# of scaffolds 57
# of scaffolds >= 2Kbp 57
Scaffold N50 5
Scaffold L50 (Mbp) 2.15
# of gaps 346
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 3.93, 3.75, 3.67


Gene Models ExternalModels
length (bp) of: average median
gene 1626 1355
transcript 1391 1128
exon 453 227
intron 115 83
description:
protein length (aa) 464 376
exons per gene 3.07 3
# of gene models 8390


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, Longo LV, Ma LJ, Malavazi I, Matsuo AL, Morais FV, Pereira M, Rodríguez-Brito S, Sakthikumar S, Salem-Izacc SM, Sykes SM, Teixeira MM, Vallejo MC, Walter ME, Yandava C, Young S, Zeng Q, Zucker J, Felipe MS, Goldman GH, Haas BJ, McEwen JG, Nino-Vega G, Puccia R, San-Blas G, Soares CM, Birren BW, Cuomo CA
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.
PLoS Genet. 2011 Oct;7(10):e1002345. doi: 10.1371/journal.pgen.1002345

Funding

This project was not sequenced at the JGI.