Status
[April 2022] The genome of Parafenestella ontariensis was provided by Evgeny Ilyukhin. It was sequenced with Illumina NovaSeq, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was extracted froom the assembled and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.13 |
| Sequencing read coverage depth | 267.4x |
| # of contigs | 175 |
| # of scaffolds | 161 |
| # of scaffolds >= 2Kbp | 119 |
| Scaffold N50 | 13 |
| Scaffold L50 (Mbp) | 0.91 |
| # of gaps | 14 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.90, 1.85, 1.66 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1719 | 1388 |
| transcript | 1544 | 1269 |
| exon | 529 | 306 |
| intron | 93 | 57 |
| description: | ||
| protein length (aa) | 515 | 423 |
| exons per gene | 2.92 | 2 |
| # of gene models | 12041 |
Collaborators
- Evgeny Ilyukhin, Brock University, Canada.
- Svetlana Markovskaja, Nature Research Centre, Lithuania.
- Sajeewa Maharachchikumbura, University of Electronic Science and Technology of China, China.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales
- JGI EcoGroup Portals: Plant Pathogens
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
