Info • Paulinella micropora KR01


The Paulinella micropora KR01 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from Rutgers on October 26, 2022. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 17035 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by Rutgers and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 707.12
Sequencing read coverage depth
# of contigs 7048
# of scaffolds 7048
# of scaffolds >= 2Kbp 7048
Scaffold N50 1555
Scaffold L50 (Mbp) 0.14
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.95, 0.80, 0.74

Gene Models FilteredModels1
length (bp) of: average median
gene 12229 5952
transcript 1786 1215
exon 133 69
intron 841 393
protein length (aa) 595 405
exons per gene 13.45 9
# of gene models 15326

Genome Reference(s)



This project was not sequenced at the JGI.