Info • Phyllosticta citrichinaensis CBS 129764 v1.0

Status

[September 2020] The Phyllosticta citrichinaensis CBS 129764 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citrichinaensis CBS 129764 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.53
Sequencing read coverage depth 92.69x
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 5
Scaffold L50 (Mbp) 2.83
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.90, 3.46, 3.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30490 29529 96.8%
Ests est.fasta 87311575 86609862 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1816 1560
transcript 1668 1419
exon 582 365
intron 81 57
description:
protein length (aa) 473 384
exons per gene 2.87 2
# of gene models 10228


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Buijs VA, Groenewald JZ, Haridas S, LaButti KM, Lipzen A, Martin FM, Barry K, Grigoriev IV, Crous PW, Seidl MF
Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis.
G3 (Bethesda). 2022 May 6;12(5):. doi: 10.1093/g3journal/jkac061

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.