Info • Penicillium antarcticum DTO 356-E5 v1.0

Status

[May 2021] The Penicillium antarcticum DTO 356-E5 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 30.74
Sequencing read coverage depth 73.11x
# of contigs 504
# of scaffolds 470
# of scaffolds >= 2Kbp 410
Scaffold N50 41
Scaffold L50 (Mbp) 0.20
# of gaps 34
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.36, 0.90, 0.70


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40129 38132 95.0%
Ests est.fasta 31731175 31333933 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1833 1610
transcript 1682 1475
exon 544 325
intron 74 58
description:
protein length (aa) 468 394
exons per gene 3.09 3
# of gene models 11610


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.