Status
This genome was sequenced by Marina Marcet-Houben et al in Centre for Genomic Regulation (CRG), Dr. Aiguader 88, Barcelona, 08003, Spain (Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus). Please check their data use policies.
Summary statistics for the Penicillium digitatum PHI26
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 25.96 |
| Sequencing read coverage depth | 83x |
| # of contigs | 304 |
| # of scaffolds | 100 |
| # of scaffolds >= 2Kbp | 86 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 0.88 |
| # of gaps | 204 |
| % of scaffold length in gaps | 1.3% |
| Three largest Scaffolds (Mbp) | 4.55, 1.90, 1.45 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1523 | 1257 |
| transcript | 1391 | 1131 |
| exon | 522 | 270 |
| intron | 82 | 62 |
| description: | ||
| protein length (aa) | 464 | 377 |
| exons per gene | 2.67 | 2 |
| # of gene models | 9118 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus.
BMC Genomics. 2012 Nov 21;13():646. doi: 10.1186/1471-2164-13-646
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus.
BMC Genomics. 2012 Nov 21;13():646. doi: 10.1186/1471-2164-13-646
Funding
This project was not sequenced at the JGI.
