Status
The genome sequence and gene models of Penicillium digitatum Pd1 have not been determined by the JGI, but were downloaded from NCBI on 6/6/2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Penicillium digitatum Pd1
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 24.88 |
| Sequencing read coverage depth | |
| # of contigs | 561 |
| # of scaffolds | 561 |
| # of scaffolds >= 2Kbp | 543 |
| Scaffold N50 | 89 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.35, 0.30, 0.29 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1504 | 1248 |
| transcript | 1371 | 1122 |
| exon | 511 | 267 |
| intron | 81 | 62 |
| description: | ||
| protein length (aa) | 457 | 374 |
| exons per gene | 2.68 | 2 |
| # of gene models | 8946 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus.
BMC Genomics. 2012 Nov 21;13():646. doi: 10.1186/1471-2164-13-646
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T
Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus.
BMC Genomics. 2012 Nov 21;13():646. doi: 10.1186/1471-2164-13-646
Funding
This project was not sequenced at the JGI.
