Status
This genome was sequenced by Guodong Liu et al. in Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China. Please check their data use policies.
Summary statistics for the Penicillium oxalicum 114-2 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 30.18 |
| Sequencing read coverage depth | 28x |
| # of contigs | 345 |
| # of scaffolds | 9 |
| # of scaffolds >= 2Kbp | 9 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 3.86 |
| # of gaps | 336 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 5.96, 4.71, 4.21 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1598 | 1342 |
| transcript | 1368 | 1122 |
| exon | 464 | 232 |
| intron | 119 | 78 |
| description: | ||
| protein length (aa) | 456 | 374 |
| exons per gene | 2.95 | 3 |
| # of gene models | 9979 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Liu G, Zhang L, Wei X, Zou G, Qin Y, Ma L, Li J, Zheng H, Wang S, Wang C, Xun L, Zhao GP, Zhou Z, Qu Y
Genomic and secretomic analyses reveal unique features of the lignocellulolytic enzyme system of Penicillium decumbens.
PLoS One. 2013;8(2):e55185. doi: 10.1371/journal.pone.0055185
Liu G, Zhang L, Wei X, Zou G, Qin Y, Ma L, Li J, Zheng H, Wang S, Wang C, Xun L, Zhao GP, Zhou Z, Qu Y
Genomic and secretomic analyses reveal unique features of the lignocellulolytic enzyme system of Penicillium decumbens.
PLoS One. 2013;8(2):e55185. doi: 10.1371/journal.pone.0055185
Funding
This project was not sequenced at the JGI.
