Status
Feb 2014.
The Penicillium raistrickii genome was aseembled with Illumina technology and assembled with AllPathsLG version R46652, (Gnerre et al., 2010).
Summary statistics for the Penicillium raistrickii ATCC
10490 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 31.44 |
| Sequencing read coverage depth | 95.1 |
| # of contigs | 104 |
| # of scaffolds | 76 |
| # of scaffolds >= 2Kbp | 54 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.33 |
| # of gaps | 28 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.36, 2.79, 2.74 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | EST_contigs | 25459 | 24534 | 96.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1784 | 1540 |
| transcript | 1622 | 1392 |
| exon | 522 | 302 |
| intron | 79 | 59 |
| description: | ||
| protein length (aa) | 470 | 394 |
| exons per gene | 3.11 | 3 |
| # of gene models | 11368 |
Collaborators
Dave Greenshields, Novozymes
Keith Seifert, Agriculture and Agri-Food Canada
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
