Info • Peziza echinospora CBS 144458 v1.0

Status

[March 2018] The Peziza echinospora CBS 144458 (DOB1120) genome was sequenced using PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Peziza echinospora CBS 144458 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 63.77
Sequencing read coverage depth 161.44x
# of contigs 241
# of scaffolds 241
# of scaffolds >= 2Kbp 224
Scaffold N50 15
Scaffold L50 (Mbp) 1.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.33, 3.66, 3.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54529 51175 93.8%
Ests est.fasta 147581739 146766287 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1866 1596
transcript 1620 1351
exon 472 287
intron 103 71
description:
protein length (aa) 454 356
exons per gene 3.43 3
# of gene models 10991


Collaborators

  • Tom Bruns at University of California Berkeley

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Steindorff AS, Seong K, Carver A, Calhoun S, Fischer MS, Stillman K, Liu H, Drula E, Henrissat B, Simpson HJ, Schilling JS, Lipzen A, He G, Yan M, Andreopoulos B, Pangilinan J, LaButti K, Ng V, Traxler M, Bruns TD, Grigoriev IV
Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development.
New Phytol. 2022 Jul 27;():. doi: 10.1111/nph.18407

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.