Info • Puccinia graminis f. sp. tritici Ug99 haplotype C

Status

The phased genome sequence and gene models for Puccinia graminis f. sp. tritici Ug99 haplotype C were not determined by the Joint Genome Institute (JGI), but were provided by Feng Li on Sept 19, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Any contigs and associated gene models that could not be confidently phased from haplotype A are also included here.

Summary statistics for the Puccinia graminis f. sp. tritici Ug99 haplotype C release are below.
Genome Assembly
Genome Assembly size (Mbp) 86.82
Sequencing read coverage depth
# of contigs 215
# of scaffolds 215
# of scaffolds >= 2Kbp 215
Scaffold N50 28
Scaffold L50 (Mbp) 0.92
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.02, 2.92, 2.43


Gene Models ExternalModels
length (bp) of: average median
gene 1568 1225
transcript 1198 876
exon 305 171
intron 129 89
description:
protein length (aa) 339 236
exons per gene 3.93 3
# of gene models 18536


Collaborators

Melania Figueroa, CSIRO, Australia

Genome Reference(s)

Funding

This project was not sequenced at the JGI.