Status
Assembly v1 (January 2016) is a standard draft assembly of PacBio and Illumina gDNA reads. A total of 591 scaffolds and 56.4 Mbp were assembled with Falcon, improved with finisherSC, and polished with Quiver.
Summary statistics for the Phaeosphaeriaceae sp. PMI_808 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 56.37 |
| Sequencing read coverage depth | 148.72x |
| # of contigs | 591 |
| # of scaffolds | 591 |
| # of scaffolds >= 2Kbp | 579 |
| Scaffold N50 | 45 |
| Scaffold L50 (Mbp) | 0.33 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.63, 1.29, 1.22 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 39656 | 36212 | 91.3% |
| Ests | est.fasta | 129162635 | 109769858 | 85.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1589 | 1347 |
| transcript | 1452 | 1215 |
| exon | 534 | 332 |
| intron | 82 | 57 |
| description: | ||
| protein length (aa) | 428 | 346 |
| exons per gene | 2.72 | 2 |
| # of gene models | 15864 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
