Status
The genome sequence and gene models of Phialophora attae CBS 131958 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on May 25, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Phialophora attae CBS 131958
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 30.36 |
| Sequencing read coverage depth | 58.0x |
| # of contigs | 131 |
| # of scaffolds | 131 |
| # of scaffolds >= 2Kbp | 80 |
| Scaffold N50 | 12 |
| Scaffold L50 (Mbp) | 0.96 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.94, 1.54, 1.51 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1557 | 1328 |
| transcript | 1437 | 1236 |
| exon | 631 | 388 |
| intron | 96 | 55 |
| description: | ||
| protein length (aa) | 479 | 412 |
| exons per gene | 2.28 | 2 |
| # of gene models | 11848 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Moreno LF, Stielow JB, de Vries M, Weiss VA, Vicente VA, de Hoog S
Draft Genome Sequence of the Ant-Associated Fungus Phialophora attae (CBS 131958).
Genome Announc. 2015 Nov 19;3(6):. doi: 10.1128/genomeA.01099-15
Moreno LF, Stielow JB, de Vries M, Weiss VA, Vicente VA, de Hoog S
Draft Genome Sequence of the Ant-Associated Fungus Phialophora attae (CBS 131958).
Genome Announc. 2015 Nov 19;3(6):. doi: 10.1128/genomeA.01099-15
Funding
This project was not sequenced at the JGI.
