Status
The Phialocephala subalpina UAMH 11012 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 69.69 |
Sequencing read coverage depth | |
# of contigs | 2358 |
# of scaffolds | 205 |
# of scaffolds >= 2Kbp | 205 |
Scaffold N50 | 17 |
Scaffold L50 (Mbp) | 1.43 |
# of gaps | 2153 |
% of scaffold length in gaps | 4.1% |
Three largest Scaffolds (Mbp) | 3.93, 3.72, 3.36 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1641 | 1407 |
transcript | 1458 | 1227 |
exon | 445 | 260 |
intron | 82 | 57 |
description: | ||
protein length (aa) | 486 | 409 |
exons per gene | 3.28 | 3 |
# of gene models | 20173 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Schlegel M, Münsterkötter M, Güldener U, Bruggmann R, Duò A, Hainaut M, Henrissat B, Sieber CM, Hoffmeister D, Grünig CR
Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles.
BMC Genomics. 2016 Dec 9;17(1):1015. doi: 10.1186/s12864-016-3369-8
Schlegel M, Münsterkötter M, Güldener U, Bruggmann R, Duò A, Hainaut M, Henrissat B, Sieber CM, Hoffmeister D, Grünig CR
Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles.
BMC Genomics. 2016 Dec 9;17(1):1015. doi: 10.1186/s12864-016-3369-8
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Leotiomycetes Helotiales
Funding
This project was not sequenced at the JGI.