Info • Phyllosticta citriasiana CBS 120486 v1.0

Status

[Oct 2014] The Phyllosticta citriasiana genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

 

Summary statistics for the Phyllosticta citriasiana v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.70
Sequencing read coverage depth 88.6x
# of contigs 741
# of scaffolds 133
# of scaffolds >= 2Kbp 117
Scaffold N50 14
Scaffold L50 (Mbp) 0.81
# of gaps 608
% of scaffold length in gaps 2.8%
Three largest Scaffolds (Mbp) 1.70, 1.64, 1.47


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 26734 26325 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1660 1399
transcript 1513 1249
exon 559 353
intron 88 58
description:
protein length (aa) 424 335
exons per gene 2.71 2
# of gene models 11368


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Guarnaccia V, Gehrmann T, Silva-Junior GJ, Fourie PH, Haridas S, Vu D, Spatafora J, Martin FM, Robert V, Grigoriev IV, Groenewald JZ, Crous PW
Phyllosticta citricarpa and sister species of global importance to Citrus.
Mol Plant Pathol. 2019 Dec;20(12):1619-1635. doi: 10.1111/mpp.12861

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.