Info • Phytophthora infestans T30-4


The genome sequence and gene models of Phytophthora infestans T30-4 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on October 20, 2017. In order to allow comparative analyses with other heterokont genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.


Summary statistics for the Phytophthora infestans T30-4 release are below.
Genome Assembly
Genome Assembly size (Mbp) 228.54
Sequencing read coverage depth
# of contigs 18288
# of scaffolds 4921
# of scaffolds >= 2Kbp 3820
Scaffold N50 38
Scaffold L50 (Mbp) 1.59
# of gaps 13367
% of scaffold length in gaps 16.8%
Three largest Scaffolds (Mbp) 6.93, 5.93, 5.46

Gene Models ExternalModels
length (bp) of: average median
gene 1531 1186
transcript 1311 984
exon 470 219
intron 125 75
protein length (aa) 421 311
exons per gene 2.79 2
# of gene models 17797

Genome Reference(s)


This project was not sequenced at the JGI.