Status
The genome sequence and gene prediction of Pichia kudriavzevii CBS573 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Nov 25, 2018. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Pichia kudriavzevii CBS573 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 10.81 |
| Sequencing read coverage depth | 93.8x |
| # of contigs | 5 |
| # of scaffolds | 5 |
| # of scaffolds >= 2Kbp | 5 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 2.75 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.85, 2.75, 2.54 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1550 | 1296 |
| transcript | 1541 | 1290 |
| exon | 1480 | 1242 |
| intron | 224 | 129 |
| description: | ||
| protein length (aa) | 514 | 430 |
| exons per gene | 1.04 | 1 |
| # of gene models | 5140 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Douglass AP, Offei B, Braun-Galleani S, Coughlan AY, Martos AAR, Ortiz-Merino RA, Byrne KP, Wolfe KH
Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names.
PLoS Pathog. 2018 Jul;14(7):e1007138. doi: 10.1371/journal.ppat.1007138
Douglass AP, Offei B, Braun-Galleani S, Coughlan AY, Martos AAR, Ortiz-Merino RA, Byrne KP, Wolfe KH
Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names.
PLoS Pathog. 2018 Jul;14(7):e1007138. doi: 10.1371/journal.ppat.1007138
Funding
This project was not sequenced at the JGI.
