Status
The Picocystis sp. ML genome sequence has not been determined by the JGI, but was downloaded from NCBI (GCA_003665715.1) on October 1, 2019. Gene models were provided by Bradley Stevenson, University of Oklahoma. Please note that this copy of the genome is not maintained by NCBI or Dr. Stevenson, and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Picocystis sp. ML release are
below.
Genome Assembly | |
Genome Assembly size (Mbp) | 29.46 |
Sequencing read coverage depth | |
# of contigs | 317 |
# of scaffolds | 317 |
# of scaffolds >= 2Kbp | 315 |
Scaffold N50 | 40 |
Scaffold L50 (Mbp) | 0.15 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.78, 0.78, 0.73 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1070 | 867 |
transcript | 723 | 576 |
exon | 356 | 204 |
intron | 339 | 228 |
description: | ||
protein length (aa) | 241 | 192 |
exons per gene | 2.03 | 2 |
# of gene models | 5613 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Junkins EN, Stamps BW, Corsetti FA, Oremland RS, Spear JR, Stevenson BS
Draft Genome Sequence of Picocystis sp. Strain ML, Cultivated from Mono Lake, California.
Microbiol Resour Announc. 2019 Jan;8(4):. doi: 10.1128/MRA.01353-18
Junkins EN, Stamps BW, Corsetti FA, Oremland RS, Spear JR, Stevenson BS
Draft Genome Sequence of Picocystis sp. Strain ML, Cultivated from Mono Lake, California.
Microbiol Resour Announc. 2019 Jan;8(4):. doi: 10.1128/MRA.01353-18
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Chlorophyta Picocystophyceae
Funding
This project was not sequenced at the JGI.