Info • Picocystis sp. ML


The Picocystis sp. ML genome sequence has not been determined by the JGI, but was downloaded from NCBI (GCA_003665715.1) on October 1, 2019. Gene models were provided by Bradley Stevenson, University of Oklahoma. Please note that this copy of the genome is not maintained by NCBI or Dr. Stevenson, and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Picocystis sp. ML release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.46
Sequencing read coverage depth
# of contigs 317
# of scaffolds 317
# of scaffolds >= 2Kbp 315
Scaffold N50 40
Scaffold L50 (Mbp) 0.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.78, 0.78, 0.73

Gene Models ExternalModels
length (bp) of: average median
gene 1070 867
transcript 723 576
exon 356 204
intron 339 228
protein length (aa) 241 192
exons per gene 2.03 2
# of gene models 5613

Genome Reference(s)


This project was not sequenced at the JGI.