Info • Picochlorum renovo


The Picochlorum renovo genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Picochlorum renovo release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.39
Sequencing read coverage depth 270x
# of contigs 29
# of scaffolds 29
# of scaffolds >= 2Kbp 29
Scaffold N50 6
Scaffold L50 (Mbp) 1.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.56, 1.30, 1.20

Gene Models ExternalModels
length (bp) of: average median
gene 1119 889
transcript 979 777
exon 459 318
intron 126 81
protein length (aa) 326 259
exons per gene 2.13 2
# of gene models 9010

Genome Reference(s)


This project was not sequenced at the JGI.