Info • Picochlorum soloecismus DOE101

Status

The Picochlorum soloecismus DOE101 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on June 22, 2017. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Picochlorum soloecismus DOE101 release are below.
Genome Assembly
Genome Assembly size (Mbp) 15.25
Sequencing read coverage depth 62x
# of contigs 56
# of scaffolds 38
# of scaffolds >= 2Kbp 38
Scaffold N50 7
Scaffold L50 (Mbp) 0.72
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.55, 1.46, 1.42


Gene Models ExternalModels
length (bp) of: average median
gene 2100 1576
transcript 1873 1398
exon 698 400
intron 137 106
description:
protein length (aa) 481 392
exons per gene 2.68 2
# of gene models 6861


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Gonzalez-Esquer CR, Twary SN, Hovde BT, Starkenburg SR
Nuclear, Chloroplast, and Mitochondrial Genome Sequences of the Prospective Microalgal Biofuel Strain Picochlorum soloecismus.
Genome Announc. 2018 Jan 25;6(4):. doi: 10.1128/genomeA.01498-17

Funding

This project was not sequenced at the JGI.