Info • Xylariales sp. AK1849 v1.0

Status

[October 2018] The Xylariales sp. AK1849 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Xylariales sp. AK1849 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.00
Sequencing read coverage depth 210.76x
# of contigs 37
# of scaffolds 37
# of scaffolds >= 2Kbp 34
Scaffold N50 5
Scaffold L50 (Mbp) 3.27
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.72, 4.63, 4.07


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52556 51239 97.5%
Ests est.fasta 107002731 106068931 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1858 1636
transcript 1697 1487
exon 589 360
intron 87 62
description:
protein length (aa) 475 397
exons per gene 2.88 2
# of gene models 12024


Collaborators

Jana U'Ren, University of Arizona, AZ

Betsy Arnold, University of Arizona, AZ

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.