Status
[April 2023] The Pleosporales sp. CORFU0007 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 47.89 |
| Sequencing read coverage depth | 148.98x |
| # of contigs | 177 |
| # of scaffolds | 177 |
| # of scaffolds >= 2Kbp | 177 |
| Scaffold N50 | 29 |
| Scaffold L50 (Mbp) | 0.49 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.70, 1.41, 1.27 |
Please note RNA data suffers from contamination. Data set has very low read mapping stats and very low contig mapping stats. Unmapped RNA contigs have BLAST hits to Homo sapiens and fungi (Fusarium, Parastagonospora, Alternaria genus).
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 89690 | 32832 | 36.6% |
| Ests | est.fasta | 83459302 | 32444727 | 38.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1782 | 1521 |
| transcript | 1626 | 1383 |
| exon | 555 | 343 |
| intron | 83 | 56 |
| description: | ||
| protein length (aa) | 474 | 387 |
| exons per gene | 2.93 | 2 |
| # of gene models | 16306 |
Collaborators
- Marcel Bucher, University of Cologne, Germany.
- Francis M. Martin, INRA-Université de Lorraine, France.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
