Status
The genome sequence and gene prediction of Pneumocystis jirovecii were not determined by the JGI, but were Downloaded from NCBI and have been published (pubmed: 23269827). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Pneumocystis jirovecii SE8 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 8.15 |
| Sequencing read coverage depth | 36x for 454 and 1,315x for Illumina |
| # of contigs | 355 |
| # of scaffolds | 355 |
| # of scaffolds >= 2Kbp | 325 |
| Scaffold N50 | 62 |
| Scaffold L50 (Mbp) | 0.04 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.13, 0.13, 0.12 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1500 | 1164 |
| transcript | 1210 | 924 |
| exon | 211 | 134 |
| intron | 63 | 47 |
| description: | ||
| protein length (aa) | 403 | 308 |
| exons per gene | 5.74 | 5 |
| # of gene models | 3520 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cissé OH, Pagni M, Hauser PM
De novo assembly of the Pneumocystis jirovecii genome from a single bronchoalveolar lavage fluid specimen from a patient.
mBio. 2012 Dec 26;4(1):e00428-12. doi: 10.1128/mBio.00428-12
Cissé OH, Pagni M, Hauser PM
De novo assembly of the Pneumocystis jirovecii genome from a single bronchoalveolar lavage fluid specimen from a patient.
mBio. 2012 Dec 26;4(1):e00428-12. doi: 10.1128/mBio.00428-12
Funding
This project was not sequenced at the JGI.
