Info • Pneumocystis jirovecii RU7

Status

The genome sequence and gene models of Pneumocystis jirovecii RU7 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 8.40
Sequencing read coverage depth
# of contigs 70
# of scaffolds 70
# of scaffolds >= 2Kbp 70
Scaffold N50 8
Scaffold L50 (Mbp) 0.45
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.64, 0.63, 0.62


Gene Models ExternalModels
length (bp) of: average median
gene 1671 1350
transcript 1430 1131
exon 248 146
intron 53 47
description:
protein length (aa) 474 376
exons per gene 5.77 5
# of gene models 3761


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ma L, Chen Z, Huang da W, Kutty G, Ishihara M, Wang H, Abouelleil A, Bishop L, Davey E, Deng R, Deng X, Fan L, Fantoni G, Fitzgerald M, Gogineni E, Goldberg JM, Handley G, Hu X, Huber C, Jiao X, Jones K, Levin JZ, Liu Y, Macdonald P, Melnikov A, Raley C, Sassi M, Sherman BT, Song X, Sykes S, Tran B, Walsh L, Xia Y, Yang J, Young S, Zeng Q, Zheng X, Stephens R, Nusbaum C, Birren BW, Azadi P, Lempicki RA, Cuomo CA, Kovacs JA
Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.
Nat Commun. 2016 Feb 22;7():10740. doi: 10.1038/ncomms10740

Links

Funding

This project was not sequenced at the JGI.