Info • Porphyra umbilicalis isolate 4086291


The genome sequence and gene models of Porphyra umbilicalis were downloaded from NCBI, on March 27, 2018. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. The latest data is available at Phytozome.

Summary statistics for the Porphyra umbilicalis release are below.
Genome Assembly
Genome Assembly size (Mbp) 87.89
Sequencing read coverage depth
# of contigs 2184
# of scaffolds 2126
# of scaffolds >= 2Kbp 1418
Scaffold N50 130
Scaffold L50 (Mbp) 0.20
# of gaps 58
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.97, 0.80, 0.73

Gene Models ExternalModels
length (bp) of: average median
gene 1826 1488
transcript 1582 1290
exon 814 574
intron 261 207
protein length (aa) 444 350
exons per gene 1.94 1
# of gene models 13567

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.