Info • Postia placenta MAD-698-R-SB12 v1.0

Status

v1.0: This draft release was produced using 454 titanium (std, 2.8kb pe), Sanger fosmids, and Illumina assembly shreds and was assembled using Newbler. The Sanger fosmids accounted for 0.38x coverage so fosmid data from a related diploid Postia (100% matching only) was used to further scaffold the assembly.

Summary statistics for the Postia placenta MAD-698-R-SB12 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 42.45
Sequencing read coverage depth 47.36
# of contigs 1446
# of scaffolds 549
# of scaffolds >= 2Kbp 549
Scaffold N50 8
Scaffold L50 (Mbp) 2.10
# of gaps 897
% of scaffold length in gaps 6.1%
Three largest Scaffolds (Mbp) 4.33, 3.52, 3.23


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 38114 34139 89.6%
Other clusters 14386 8305 57.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1857 1492
transcript 1344 1115
exon 216 135
intron 100 58
description:
protein length (aa) 429 354
exons per gene 6.23 5
# of gene models 12541


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Gaskell J, Kersten P, Larrondo LF, Canessa P, Martinez D, Hibbett D, Schmoll M, Kubicek CP, Martinez AT, Yadav J, Master E, Magnuson JK, Yaver D, Berka R, Lail K, Chen C, LaButti K, Nolan M, Lipzen A, Aerts A, Riley R, Barry K, Henrissat B, Blanchette R, Grigoriev IV, Cullen D
Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12.
Genom Data. 2017 Dec;14():21-23. doi: 10.1016/j.gdata.2017.08.003

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.