Info • Prasinoderma coloniale CCMP1413

Status

The Prasinoderma coloniale CCMP1413 genome assembly and gene models have not been determined by the JGI, but were downloaded from the CNGB Nucleotide Sequence Archive (accession no. CNP0000924) on July 20, 2020. Please note that this copy of the genome is not maintained by CNGB and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome. The mitochondrial and chloroplast assemblies, identified from fasta annotation, were separated from the nuclear genome and are available from the download section.

Summary statistics for the Prasinoderma coloniale CCMP1413 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.32
Sequencing read coverage depth
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 7
Scaffold L50 (Mbp) 1.23
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.60, 2.45, 2.23


Gene Models ExternalModels
length (bp) of: average median
gene 1900 1555
transcript 1615 1290
exon 714 387
intron 228 164
description:
protein length (aa) 491 391
exons per gene 2.26 2
# of gene models 7139


Genome Reference(s)

Funding

This project was not sequenced at the JGI.