Status
The genome of Protomyces inouyei was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Protomyces inouyei genome v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 12.20 |
| Sequencing read coverage depth | 136.89x |
| # of contigs | 1535 |
| # of scaffolds | 1535 |
| # of scaffolds >= 2Kbp | 508 |
| Scaffold N50 | 101 |
| Scaffold L50 (Mbp) | 0.04 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.17, 0.16, 0.16 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1298 | 1033 |
| transcript | 1232 | 975 |
| exon | 713 | 381 |
| intron | 91 | 51 |
| description: | ||
| protein length (aa) | 411 | 325 |
| exons per gene | 1.73 | 1 |
| # of gene models | 7804 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.
