Status
The genome sequence and gene models of Pseudogymnoascus destructans 20631-21 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on September 19, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Pseudogymnoascus destructans
20631-21 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.82 |
| Sequencing read coverage depth | 250.0x |
| # of contigs | 85 |
| # of scaffolds | 83 |
| # of scaffolds >= 2Kbp | 83 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 1.17 |
| # of gaps | 2 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.55, 2.23, 1.86 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1477 | 1199 |
| transcript | 1325 | 1038 |
| exon | 500 | 258 |
| intron | 95 | 59 |
| description: | ||
| protein length (aa) | 442 | 346 |
| exons per gene | 2.65 | 2 |
| # of gene models | 9335 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Drees KP, Palmer JM, Sebra R, Lorch JM, Chen C, Wu CC, Bok JW, Keller NP, Blehert DS, Cuomo CA, Lindner DL, Foster JT
Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome.
Genome Announc. 2016 Jun 30;4(3):. doi: 10.1128/genomeA.00445-16
Drees KP, Palmer JM, Sebra R, Lorch JM, Chen C, Wu CC, Bok JW, Keller NP, Blehert DS, Cuomo CA, Lindner DL, Foster JT
Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome.
Genome Announc. 2016 Jun 30;4(3):. doi: 10.1128/genomeA.00445-16
Funding
This project was not sequenced at the JGI.
