Info • Pseudomassariella vexata CBS 129021 v1.0

Status

[April 2016] The Pseudomassariella vexata CBS 129021 genome was sequenced using PacBio reads and assembled with Falcon, improved with finisherSC and polished with Quiver.
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pseudomassariella vexata CBS 129021 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.71
Sequencing read coverage depth 86.57x
# of contigs 37
# of scaffolds 37
# of scaffolds >= 2Kbp 37
Scaffold N50 7
Scaffold L50 (Mbp) 2.56
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.51, 3.70, 3.46


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39160 32550 83.1%
Ests est.fasta 87926067 84977510 96.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1653 1415
transcript 1499 1275
exon 543 328
intron 90 63
description:
protein length (aa) 438 359
exons per gene 2.76 2
# of gene models 12565


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV
Widespread adenine N6-methylation of active genes in fungi.
Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.