Status
Genome sequencing of Psilocybe cubensis was not conducted at the DOE Joint Genome Institute, rather it was initiated and carried out by the Department of Pharmaceutical Microbiology at the Friedrich-Schiller-University Jena, Germany. The genome was then annotated using the JGI annotation pipeline.
Summary statistics for the Psilocybe cubensis v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 41.30 |
| Sequencing read coverage depth | 1.0x |
| # of contigs | 4194 |
| # of scaffolds | 2939 |
| # of scaffolds >= 2Kbp | 777 |
| Scaffold N50 | 84 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 1255 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 1.02, 1.00, 0.72 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1711 | 1433 |
| transcript | 1325 | 1095 |
| exon | 211 | 130 |
| intron | 75 | 59 |
| description: | ||
| protein length (aa) | 442 | 365 |
| exons per gene | 6.29 | 5 |
| # of gene models | 13361 |
Collaborators
Dirk Hoffmeister, Hans Knöll Institute, Germany
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Fricke J, Blei F, Hoffmeister D
Enzymatic Synthesis of Psilocybin.
Angew Chem Int Ed Engl. 2017 Sep 25;56(40):12352-12355. doi: 10.1002/anie.201705489
Fricke J, Blei F, Hoffmeister D
Enzymatic Synthesis of Psilocybin.
Angew Chem Int Ed Engl. 2017 Sep 25;56(40):12352-12355. doi: 10.1002/anie.201705489
Funding
This project was not sequenced at the JGI.
